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Plant Population GeneticsPlant Population Genetics
Next: Spring 2016  
_schedule_V_PopGen.xls Here is the schedule of the lecture for 2016. 
_contents_V_PopGen.pdf Overview and contents of the lecture 
_literature_V_PopGen.pdf Recommended literature 
_glossary_V_PopGen.pdf A glossary for special terms used in the lecture 
V01_Intro.pdf Lesson 1, script: Introduction 
V01b_Basic_genetics.pdf Lesson 1, script: Brief repetition of school knowledge in genetics 
V01_Excel.pdf Lesson 1, script: Introduction into some Excel commands used in the models presented in this lecture 
V02_GenVar.pdf Lesson 2, script: Genetic variation and its measurement 
V02a_Basic genetics_Mendel.pdf Lesson 2, script: Mendelian inheritance 
V02a_Mendel_comb.xls Lesson 2, worksheet: an algorithm for the inheritance of multiple traits according to Mendels rules 
V03_HWE.pdf Lesson 3, script: The Hardy Weinberg Equilibrium as the central model of population genetics 
V03_HWE_mono_basic.xls Lesson3, worksheet: Single locus model HWE for a diploid sexual organism, test for HWE 
V03_HWE_mono_mating.xls.zip Lesson3, worksheet: Single locus model HWE for a diploid sexual plants with the reproductive options allogamy with or without SI-system / autogamy / vegetative reproduction (File is too large, please unzip) 
V03_HWE_di linkage.xls Lesson3, worksheet: Two locus model HWE for a diploid sexual organism, test for HWE 
V03_HWE_POPeup.xls Lesson3, worksheet: HWE for a diploid sexual organism, test for HWE 
V03_HWE_equation.xls Lesson3, worksheet: Derivation of HWE equations for several combinations of loci and alleles 
V04_Genetic diversity.pdf Lesson 4, script: Genetic diversity with and within populations, F-statistics 
V04_Genetic distance.xls Lesson 4, worksheet: Calculations for F-statistics 
V05_Selection.pdf Lesson 5, script: Natural selection 
V05_Selection_model.pdf Lesson 5, description: Two locus - two allele model for selection 
V05_SelectionA_haploid_asex.xls Lesson 5, worksheet: Two locus - two allele model for selection in a haploid asexual organism 
V05_SelectionB_diploid_asex.xls Lesson 5, worksheet: Two locus - two allele model for selection in a diploid asexual organism 
V05_SelectionC_diploid_asex_Dr.xls Lesson 5, worksheet: Two locus - two allele model for selection in a diploid sexual organism considering domonant and recessive alleles 
V05_SelectionD_diploid_sex_all.xls.zip Lesson 5, worksheet: Two locus - two allele model for selection in a diploid sexual organism with several reproductive options, full version (25 MB, pleas unzip) 
V05_SelectionD_diploid_sex_all.xls Lesson 5, worksheet: Two locus - two allele model for selection in a diploid sexual organism with several reproductive options: short version (2 MB, commands to be dragged down) 
V06_Genetic drift.pdf Lesson 6, script: Genetic drift 
V06_Drift_model.pdf Lesson 6, guideline: Description of the genetic drift model 
V06_Drift_model.xls Lesson 6, Genetic drift model simulating a bottleneck effect 
V06_Drift_equations.pdf Lesson 6: Detailed explanations for the equations in this lesson 
V07_Inbreeding.pdf Lesson 7, script: Inbreeding despression 
V07_SelectionF_descr.pdf Lesson 7, description: Selection model for inbreeding populations 
V07_SelectionF_diploid_sex_pop.xls.zip Lesson 7,worksheet: Selection model for inbreeding populations, full model (20 MB, please unzip) 
V07_SelectionF_diploid_sex_pop_zip.xls Lesson 7, worksheet: Selection model for inbreeding populations, reduced model (drag commands down to make it work) 
V08_Ne_equations.pdf Lesson 8: Detailed explanations for the equations in this lesson 
V08a_Estimat_PopSize_2009.pdf Lesson 8, script: Methods for estimation of population sizes 
V08b_Effect_PopSize_2009.pdf Lesson 8, script: Methods for estimation of effective population sizes 
V09_MetaPopGen.pdf Lesson 9, script: Gene flow in metapopulations 
V09_IsolatedPopulations_descr.pdf Lesson 9, description: Model for gene flow in five isolated populations according to the stepping stone model 
V09_IsolatedPopulations.xls.zip Lesson 9, worksheet: Model for gene flow in five isolated populations according to the stepping stone model, full version (20 MB, please unzip) 
V09_IsolatedPopulations.xls Lesson 9, worksheet: Model for gene flow in five isolated populations according to the stepping stone model, reduced version (partial model, drag down commands to make it work) 
V09_IsolationGraphics.xls Lesson 9, graphics for calculation of gene flow between two isolated poulations in dependence from migration rate 
V10_Speciation&Management.pdf Lesson 10, script: Speciation processes and ppulation genetics of endangered species 
V10_speciation.xls.zip Lesson 10, worksheet: Model for speciation by geographical isolation in dependence from gene flow (15 MB, please unzip) 
V11_linkage.pdf Lesson 11, script: Linkage between loci and linkage disequilibrium 
V11_crossing_over.xls Lesson 11: worksheet: probability of a crossing-over event in dependence from distance between loci 
V11_HWE_di_linkage_descr.pdf Lesson 11, description: Model for allele frequencies of two loci in depoendence from linkage disequilibrium 
V11_HWE_di_linkage_2.xls Lesson 11, worksheet: Model for allele frequencies of two loci in depoendence from linkage disequilibrium 
V11_SelectionE_descr.pdf Lesson 11, description: Model for linkage effects on selection 
V11_SelectionE_diploid_sex_all.xls.zip Lesson 11, worksheet: model for for linkage effects on selection (full modell, 30 MB, please unzip) 
V11_SelectionE_diploid_sex_all.xls Lesson 11, worksheet: model for for linkage effects on selection (partial modell, 3 MB, drag down commands to make it workable) 
V11b_QTL.pdf Lesson 11, script: Inheritance of quantitative traits 
V12_MolMethods.pdf Lesson 12, script: Introduction to basic molecular methods used in population gerentics 
V12_SequencerABI310.pdf Lesson 12, script: DNA sequencing and fragment analysis with a capillary sequencer 
V13_MolMarkers.pdf Lesson 13, script: Molecular markers in population genetics 
V13_Microsatellites_Ing6.xls Lesson 13, worksheet: microsatellite genotyping in diploid Populus euphratica, real data (8 MB) 
V13_SSR_polyploid_comb.xls Lesson 13, worksheet: microsatellites in polyploid plants: how many alleles are possible? 
V13_SSR_MERper_sim2.xls Lesson 13, worksheet: microsatellite genotyping in polyploid Mercurialis perennis, example 
V13_SSR_MERper_Paare03_SEMI_new.xls Lesson 13, worksheet: microsatellite genotyping in polyploid Mercurialis perennis, real data 
V13_AFLP_GAGlutEH_IIIII_new.xls Lesson 13, worksheet: AFLP genotyping in Gagea lutea, real data (12 MB) 
V14a_outlook.pdf Lesson 14, script: Examples for population genetic studies in plants, outlook 
V14b_program.pdf Lesson 14, script: Tricks and problems in using free software for populatin genetics